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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74663074_74668082_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74663074 - 74668082
Intron Length:
5009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TAGTTCTTAAAA
Flanking Amino Acid:
VRCTAARMFELSEDCNNSCF
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
70.4
0.64
1.3
73.56
37.9

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018102
74661281 - 74703638
42358