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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74663342_74668082_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74663342 - 74668082
Intron Length:
4741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GACTGGTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CGTTTTTTATTG
Flanking Amino Acid:
VRCTAARMFELTLRGMSEAL
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.2
0.43
1
60.4
44.6
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
50.7
-0.1
1.6
54.7
41.6

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040660
74655376 - 74703638
48263