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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74664101_74668082_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74664101 - 74668082
Intron Length:
3982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCCGACCATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
CCTGTGATAACC
Flanking Amino Acid:
VRCTAARMFELLVKGVHETL
Intron Amino Acid Position:
855

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
66.7
0.38
1
62.4
38.6
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
43.1
-0.5
2.3
53.78
44.5

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035660
74655376 - 74703638
48263
ENSAPLT00000022025
74663259 - 74703638
40380
ENSAPLT00000004061
74655376 - 74703638
48263