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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74674431_74675254_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74674431 - 74675254
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CCAACCTGAAAT
Flanking Amino Acid:
LLNKIEKLLREGEHGLDEHK
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.9
36.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
82.4
0.73
0.9
80.3
37.3
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
51
0.11
1.7
64.05
45.4

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022025
74663259 - 74703638
40380
ENSAPLT00000018102
74661281 - 74703638
42358
ENSAPLT00000004061
74655376 - 74703638
48263
ENSAPLT00000040660
74655376 - 74703638
48263
ENSAPLT00000035660
74655376 - 74703638
48263