About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74675420_74676108_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74675420 - 74676108
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATATTCTTAATA
Flanking Amino Acid:
YIDDPDKYQQGFELLLSALG
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
77.2
0.85
1
78.28
31.7

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022025
74663259 - 74703638
40380
ENSAPLT00000018102
74661281 - 74703638
42358
ENSAPLT00000004061
74655376 - 74703638
48263
ENSAPLT00000040660
74655376 - 74703638
48263
ENSAPLT00000035660
74655376 - 74703638
48263