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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74676250_74677069_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74676250 - 74677069
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTGGATTTAACA
Flanking Amino Acid:
SCGALAPYLPKEIRSSLVLS
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
67.1
0.39
1
62.4
37.7
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
62.8
0.4
1.6
71.81
40.6

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035660
74655376 - 74703638
48263
ENSAPLT00000022025
74663259 - 74703638
40380
ENSAPLT00000018102
74661281 - 74703638
42358
ENSAPLT00000004061
74655376 - 74703638
48263
ENSAPLT00000040660
74655376 - 74703638
48263