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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74677142_74681275_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74677142 - 74681275
Intron Length:
4134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCAAAT
U12 Branch Point Sequence:
TTCTCCTCACCA
Flanking Amino Acid:
AELLPQCWEQINHKYPERRL
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
53.3
0.08
1.1
59
36
Major PPT
77
0.61
0.8
70.7
34.8
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
62.3
0.38
1.9
75.44
42.2

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022025
74663259 - 74703638
40380
ENSAPLT00000018102
74661281 - 74703638
42358
ENSAPLT00000004061
74655376 - 74703638
48263
ENSAPLT00000040660
74655376 - 74703638
48263
ENSAPLT00000035660
74655376 - 74703638
48263