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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74686055_74693851_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74686055 - 74693851
Intron Length:
7797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGCAACTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTCCCCTACTT
Flanking Amino Acid:
REKMVLHLCQELIPLILCTA
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
69.8
0.44
0.9
66
40.4
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
58
0.33
2
82.26
39.1

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035660
74655376 - 74703638
48263