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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74700135_74700220_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74700135 - 74700220
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTGTATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
CTGTACTAAACT
Flanking Amino Acid:
VFETTPQSIEQCLIVQKLED
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.9
29.9
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
71.7
0.49
1
69.9
40.6
Minor 5ss
33.8
-1.8
3.5
47.5
42.5
Minor BPS
59
0.36
1.9
76.54
45.9

Associated Gene:

Gene:
RELCH
Ensembl Gene ID:
ENSAPLG00000003919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018102
74661281 - 74703638
42358
ENSAPLT00000004061
74655376 - 74703638
48263
ENSAPLT00000040660
74655376 - 74703638
48263
ENSAPLT00000035660
74655376 - 74703638
48263
ENSAPLT00000022025
74663259 - 74703638
40380