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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74738621_74742284_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74738621 - 74742284
Intron Length:
3664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
CAAGCATTAACT
Flanking Amino Acid:
GNNTSHAPYLRGILENNGSW
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
71.9
39.6
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
89.8
0.9
0.7
88.4
28
Minor 5ss
35
-1.7
2.9
43.6
43.3
Minor BPS
58.3
0.34
1.8
71.36
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004388
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004496
74738325 - 74751843
13519