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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74742407_74743384_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74742407 - 74743384
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCAG
5'SS Class:
major
3'SS Sequence:
GTATGTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
GTATGTTTAACA
Flanking Amino Acid:
FYEDVSAVAKGWKENPVEFD
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
61.5
44.7
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
71.1
0.47
1
65.8
44.1
Minor 5ss
43.3
-0.7
2.9
55.3
48.9
Minor BPS
64.5
0.45
1.8
72.84
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004388
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004496
74738325 - 74751843
13519