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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74810104_74813290_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74810104 - 74813290
Intron Length:
3187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGAATC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGTTTTTATA
Flanking Amino Acid:
VVGREPNIPLVIAAGLLTLL
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.9
38
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.1
0.86
0.7
84.2
30.9
Minor 5ss
40
-1.1
3.1
53.9
43.1
Minor BPS
55.5
0.17
1.7
69.65
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002167
74808354 - 74842438
34085