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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74813403_74818656_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74813403 - 74818656
Intron Length:
5254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTTTTATTGATT
Flanking Amino Acid:
NEDMKVHFYQMLSIALSTYV
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.3
73.2
39.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
87.2
0.84
0.6
81
31.1
Minor 5ss
36
-1.6
2.7
44.9
43
Minor BPS
63.3
0.5
1.6
80.48
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002167
74808354 - 74842438
34085