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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74818766_74822335_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74818766 - 74822335
Intron Length:
3570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CATGCAGTGACT
Flanking Amino Acid:
FNQIISWTTLVSSSVLPLLS
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
89.9
0.9
0.6
84.8
22.8
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
44.8
-0.3
2.3
64.86
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002167
74808354 - 74842438
34085