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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74822439_74824370_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74822439 - 74824370
Intron Length:
1932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACTTCTT
5'SS Class:
major
3'SS Sequence:
CGTTGTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TGATTATTACGT
Flanking Amino Acid:
LMATYLLLSTGYEALFPLVL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
65.7
45.6
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
69
0.43
1
66
40
Minor 5ss
38.7
-1.3
3.3
50.3
46
Minor BPS
46.3
-0.2
2.1
66.22
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002167
74808354 - 74842438
34085