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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74824474_74826610_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74824474 - 74826610
Intron Length:
2137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGCT
5'SS Class:
major
3'SS Sequence:
GCTGTCTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CATTATGTAACA
Flanking Amino Acid:
QHYGLSLKPKLAVFNFAYAT
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
37.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
74.1
0.54
0.9
65
41.2
Minor 5ss
38.6
-1.3
3.4
57.4
46.8
Minor BPS
49.3
-0
2.2
65.06
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002167
74808354 - 74842438
34085