About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74826698_74828421_F

Intron Information:

Intron Rank:
7
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
74826698 - 74828421
Intron Length:
1724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TAAATGCATCTAG|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TTTTCCTTAAAT
Flanking Amino Acid:
LDDIRRSFFFVFFIVTAFFG
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.5
-0
1.4
55
44.6
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
58.1
0.18
1
48.4
44.6
Minor 5ss
95.1
1.52
0.8
90.6
20
Minor BPS
90.6
1.35
1
101.7
23.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002167
74808354 - 74842438
34085