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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74829032_74830351_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74829032 - 74830351
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
TCTGTTTTAACA
Flanking Amino Acid:
FMMGGLLVLKVVIPFVLVSC
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
80.3
0.68
0.9
76.7
36.2
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
69.5
0.61
1.3
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002167
74808354 - 74842438
34085