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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74830426_74833172_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74830426 - 74833172
Intron Length:
2747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
CTTTTCTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
GCTGTTTTACTT
Flanking Amino Acid:
VQVTTQLSSKSLFLIVLVIS
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
88.1
0.86
0.6
84.1
23.9
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
48.9
-0
1.7
62.87
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002167
74808354 - 74842438
34085