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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75005567_75005886_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75005567 - 75005886
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCTTACTGATGG
Flanking Amino Acid:
AILACIFVLLVLVLLILSMR
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.5
34.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
75.1
0.57
0.8
69.7
31
Minor 5ss
38.7
-1.3
3.4
56.7
47.6
Minor BPS
44
-0.6
2.2
53.01
47.3

Associated Gene:

Gene:
CDH20
Ensembl Gene ID:
ENSAPLG00000011358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011974
75005067 - 75041026
35960