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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75006139_75011900_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75006139 - 75011900
Intron Length:
5762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAGA
5'SS Class:
major
3'SS Sequence:
TGTCCACCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGTAA
U12 Branch Point Sequence:
CTGTGTGTAAGT
Flanking Amino Acid:
NPNFTLRDNQDNTAWILTRR
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.8
41.1
Major BPS
48.9
-0
1.5
49.4
46
Major PPT
65
0.34
0.8
55.8
35.3
Minor 5ss
38.8
-1.3
2.8
49.6
46.2
Minor BPS
42.5
-0.4
2.5
62.35
48.3

Associated Gene:

Gene:
CDH20
Ensembl Gene ID:
ENSAPLG00000011358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011974
75005067 - 75041026
35960