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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75012019_75013872_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75012019 - 75013872
Intron Length:
1854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCGTATTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGCTTCTCACCT
Flanking Amino Acid:
FVCENAKAGQLIQTVSAIDR
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.9
0.56
0.9
69.8
36.3
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
53.3
0.18
1.9
72.31
44.6

Associated Gene:

Gene:
CDH20
Ensembl Gene ID:
ENSAPLG00000011358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011974
75005067 - 75041026
35960