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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75028990_75032206_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75028990 - 75032206
Intron Length:
3217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATCAT
5'SS Class:
major
3'SS Sequence:
CTCAATCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
GCTCCCAAAACC
Flanking Amino Acid:
QPYFSVDSRTGLIRTALMNM
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
73
37.8
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
71.3
0.48
0.9
64.1
36.3
Minor 5ss
41.3
-1
3
58.1
46.5
Minor BPS
48.8
-0.1
2
61.83
43.2

Associated Gene:

Gene:
CDH20
Ensembl Gene ID:
ENSAPLG00000011358
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011974
75005067 - 75041026
35960