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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75202103_75203070_R

Intron Information:

Intron Rank:
141319
Intron Class:
major
Intron Phase:
Intron Coordinates:
75202103 - 75203070
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TGTTTTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.1
30.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
91.7
0.94
0.7
84.6
36
Minor 5ss
30.6
-2.2
3
41.1
45.5
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046311
75202084 - 75204190
2107