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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75227839_75231252_R

Intron Information:

Intron Rank:
148854
Intron Class:
major
Intron Phase:
Intron Coordinates:
75227839 - 75231252
Intron Length:
3414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TTGCCCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
71.8
0.49
1
68.7
37.1
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
57.8
0.32
1.9
78.02
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027553
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047379
75227584 - 75234778
7195
ENSAPLT00000046031
75227584 - 75289333
61750
ENSAPLT00000028919
75227584 - 75308319
80736