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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75231349_75289106_R

Intron Information:

Intron Rank:
148860
Intron Class:
major
Intron Phase:
Intron Coordinates:
75231349 - 75289106
Intron Length:
57758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GCATTTTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGCTAATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
73.8
0.53
1
68.7
41.8
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
52.7
0.16
1.9
72.72
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027553
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046031
75227584 - 75289333
61750