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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75320439_75320783_R

Intron Information:

Intron Rank:
140018
Intron Class:
major
Intron Phase:
Intron Coordinates:
75320439 - 75320783
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGCGTAGG
5'SS Class:
major
3'SS Sequence:
CTTTCACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTAACTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
59.9
46.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.8
0.78
0.7
81.7
29
Minor 5ss
28.2
-2.5
2.7
24.4
36.9
Minor BPS
70.7
0.73
1.4
83.2
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022722
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031251
75318265 - 75321341
3077