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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75346287_75361961_R

Intron Information:

Intron Rank:
155412
Intron Class:
major
Intron Phase:
Intron Coordinates:
75346287 - 75361961
Intron Length:
15675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
CCTCTTGGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTTTCTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
67.1
44.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69.7
0.44
0.9
68.5
37.3
Minor 5ss
34.5
-1.8
3.5
39.9
46.1
Minor BPS
68.9
0.58
1.7
77.35
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031107
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020693
75345076 - 75362260
17185