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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75386270_75388845_R

Intron Information:

Intron Rank:
132854
Intron Class:
major
Intron Phase:
Intron Coordinates:
75386270 - 75388845
Intron Length:
2576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
ATTGGTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTATTTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
68.7
0.42
1
67.5
43.1
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
50.3
0
1.6
63.8
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018691
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032454
75386230 - 75423845
37616