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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75414046_75414796_R

Intron Information:

Intron Rank:
132846
Intron Class:
major
Intron Phase:
Intron Coordinates:
75414046 - 75414796
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCATCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
ATTCTCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
71.3
0.53
1
61.3
37
Major PPT
78
0.63
0.9
74.2
35.5
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
66.3
0.59
1.4
80.65
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018691
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022922
75412545 - 75423845
11301
ENSAPLT00000030439
75413125 - 75423845
10721
ENSAPLT00000027696
75413125 - 75418915
5791