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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75414831_75423353_R

Intron Information:

Intron Rank:
132847
Intron Class:
major
Intron Phase:
Intron Coordinates:
75414831 - 75423353
Intron Length:
8523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTCTA
5'SS Class:
major
3'SS Sequence:
TTTATTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
66.8
40.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.5
0.96
0.7
88.4
28.6
Minor 5ss
31.1
-2.2
3.2
37
42.7
Minor BPS
57.6
0.32
1.8
76.35
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018691
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032454
75386230 - 75423845
37616
ENSAPLT00000030439
75413125 - 75423845
10721
ENSAPLT00000022922
75412545 - 75423845
11301