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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75485610_75486076_R

Intron Information:

Intron Rank:
133975
Intron Class:
major
Intron Phase:
Intron Coordinates:
75485610 - 75486076
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTTTTTTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
79.7
35.3
Major BPS
61.3
0.28
1
62
30.6
Major PPT
90.1
0.9
0.8
85.7
33.5
Minor 5ss
43.1
-0.8
2.7
56.7
42
Minor BPS
71.5
0.67
1.5
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019348
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022198
75485525 - 75487490
1966