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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75486126_75487194_R

Intron Information:

Intron Rank:
133976
Intron Class:
major
Intron Phase:
Intron Coordinates:
75486126 - 75487194
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
TCTTCCAAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.3
71.4
40.3
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
92.6
0.96
0.6
87.8
22.4
Minor 5ss
33.9
-1.8
2.7
39.4
38.9
Minor BPS
52.7
-0
2
63.85
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019348
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022198
75485525 - 75487490
1966