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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75527030_75527836_R

Intron Information:

Intron Rank:
132588
Intron Class:
major
Intron Phase:
Intron Coordinates:
75527030 - 75527836
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTCAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
GCTCACTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.1
34
Major BPS
69
0.47
1
69.9
32.6
Major PPT
81
0.7
1
80.3
32.2
Minor 5ss
36.5
-1.5
2.9
44.7
43.5
Minor BPS
56.4
0.2
1.7
64.42
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025398
75526994 - 75531774
4781