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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75572581_75573673_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75572581 - 75573673
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCCTTCTTCATT
Flanking Amino Acid:
DTVFDKEVLFSELSIENWIM
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.3
0.82
0.7
80.8
29.7
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
60.3
0.4
1.8
74.4
43.5

Associated Gene:

Gene:
C5orf22
Ensembl Gene ID:
ENSAPLG00000004273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037084
75538097 - 75575669
37573
ENSAPLT00000004391
75561737 - 75575669
13933