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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75578081_75578176_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75578081 - 75578176
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCTAC
5'SS Class:
major
3'SS Sequence:
TGGCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
ACTTCAACAGCT
Flanking Amino Acid:
PPPPPVIPQQSSTTNSSGGS
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.3
69.3
38.5
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
80
0.68
0.9
77
37.2
Minor 5ss
39.6
-1.2
2.9
50.2
46.4
Minor BPS
43.3
-0.4
2.2
65.35
44.5

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038864
75577619 - 75643816
66198