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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75580954_75581746_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75580954 - 75581746
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCATTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
SYKKDYKRTGSCSPSRERKR
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
71.7
0.49
1
76.5
31.5
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038864
75577619 - 75643816
66198
ENSAPLT00000021447
75577619 - 75643816
66198
ENSAPLT00000004662
75577619 - 75643816
66198