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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75581979_75582824_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75581979 - 75582824
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTTCG
5'SS Class:
major
3'SS Sequence:
TTTTAATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATT
Flanking Amino Acid:
YYSNDPMDQVGDSTVVGTSK
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.8
39.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79
0.65
1
74.4
38.9
Minor 5ss
46.7
-0.3
2.4
55.7
43.9
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038864
75577619 - 75643816
66198
ENSAPLT00000021447
75577619 - 75643816
66198
ENSAPLT00000004662
75577619 - 75643816
66198