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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75586117_75588799_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75586117 - 75588799
Intron Length:
2683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAATAAAA
Flanking Amino Acid:
EELWYNDPGQMNDGPLCKCS
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.4
39.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82
0.72
1
79.9
37.7
Minor 5ss
42.2
-0.9
3.1
55.7
48.5
Minor BPS
59.9
0.31
2
79.52
35.6

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038864
75577619 - 75643816
66198
ENSAPLT00000021447
75577619 - 75643816
66198
ENSAPLT00000004662
75577619 - 75643816
66198