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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75588881_75590902_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75588881 - 75590902
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTCTACTTATCT
Flanking Amino Acid:
IRHGIYPGEEPIKPCRPMTN
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
78
0.63
1
82.6
26.5
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
66.8
0.61
1.8
84.92
41.5

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038864
75577619 - 75643816
66198
ENSAPLT00000021447
75577619 - 75643816
66198
ENSAPLT00000004662
75577619 - 75643816
66198