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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75591182_75595266_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75591182 - 75595266
Intron Length:
4085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TGTTTTTTCCCT
Flanking Amino Acid:
SMFSHAPLTNNFCVKGLELF
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
80.1
0.68
0.8
73.8
36.8
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
42.9
-0.4
3.5
75.46
41.9

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021447
75577619 - 75643816
66198