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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75604180_75606207_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75604180 - 75606207
Intron Length:
2028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGATGC
5'SS Class:
major
3'SS Sequence:
TTTTGTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
ATCAACTAAAAT
Flanking Amino Acid:
PAQLSYAGDPQYQKLWKSYV
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
60.9
39.2
Major BPS
70.2
0.5
1
72.1
33
Major PPT
88
0.85
0.7
85.6
29.1
Minor 5ss
40.5
-1.1
3.1
56.4
42
Minor BPS
47.2
-0.1
2
65.56
44.3

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038864
75577619 - 75643816
66198
ENSAPLT00000021447
75577619 - 75643816
66198
ENSAPLT00000004662
75577619 - 75643816
66198