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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75606308_75609158_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75606308 - 75609158
Intron Length:
2851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
TCTGCCTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
AAGTTCTTCACA
Flanking Amino Acid:
ADKQKLSQREEALQKIRQKN
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.3
44.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
69.6
0.44
0.9
61.8
39.9
Minor 5ss
49.3
-0
2.5
64.5
46.9
Minor BPS
58.4
0.26
1.8
66.33
40.2

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038864
75577619 - 75643816
66198
ENSAPLT00000021447
75577619 - 75643816
66198
ENSAPLT00000004662
75577619 - 75643816
66198