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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75618560_75620541_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75618560 - 75620541
Intron Length:
1982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTGCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CCATCTTCATTT
Flanking Amino Acid:
LGDAVVEFLTSVHLYYLFPT
Intron Amino Acid Position:
943

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66
45.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.8
0.72
1
76.9
42.1
Minor 5ss
38.1
-1.3
2.9
48.8
47
Minor BPS
47.4
-0.1
1.8
60.23
44.2

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038864
75577619 - 75643816
66198
ENSAPLT00000021447
75577619 - 75643816
66198
ENSAPLT00000004662
75577619 - 75643816
66198