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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75620642_75623358_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75620642 - 75623358
Intron Length:
2717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACCCC
5'SS Class:
major
3'SS Sequence:
TCACATTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATGGCTTTAACT
Flanking Amino Acid:
QNQHLAMLAKKLELDRFMLY
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.1
54.2
43.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.6
0.58
0.9
69.3
36.3
Minor 5ss
37.4
-1.4
3.3
51.8
44.9
Minor BPS
72.9
0.8
1.3
81.85
40.1

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038864
75577619 - 75643816
66198
ENSAPLT00000021447
75577619 - 75643816
66198
ENSAPLT00000004662
75577619 - 75643816
66198