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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75633086_75636445_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75633086 - 75636445
Intron Length:
3360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGACTG
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TTACCATTGAGT
Flanking Amino Acid:
FPDHHEGHLTLLRSSLVNNR
Intron Amino Acid Position:
1138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
62.8
43.3
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
30.6
-2.2
3.2
40.3
45.3
Minor BPS
52.7
0.16
2
75.04
41.3

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004662
75577619 - 75643816
66198
ENSAPLT00000038864
75577619 - 75643816
66198
ENSAPLT00000021447
75577619 - 75643816
66198