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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75640674_75643667_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75640674 - 75643667
Intron Length:
2994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTTATTAATA
Flanking Amino Acid:
MGAAMDALEKI*
Intron Amino Acid Position:
1294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.8
28.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.7
0.58
1
76.1
37.8
Minor 5ss
42
-0.9
3.2
60.9
43.8
Minor BPS
68.4
0.57
1.5
76.99
33.5

Associated Gene:

Gene:
DROSHA
Ensembl Gene ID:
ENSAPLG00000004372
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038864
75577619 - 75643816
66198
ENSAPLT00000021447
75577619 - 75643816
66198
ENSAPLT00000004662
75577619 - 75643816
66198