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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75675691_75675777_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75675691 - 75675777
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TGAGTATAAAAT
Flanking Amino Acid:
SSNFTLQDNRDNTAGIFTRK
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
27.1
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
85.3
0.79
0.9
76.9
42.1
Minor 5ss
38.7
-1.3
3
52
45.2
Minor BPS
43.3
-0.4
2
59.62
43.3

Associated Gene:

Gene:
CDH6
Ensembl Gene ID:
ENSAPLG00000005708
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022926
75669204 - 75724036
54833
ENSAPLT00000005960
75671287 - 75770008
98722