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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75675896_75676718_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75675896 - 75676718
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTG
Flanking Amino Acid:
FVCENAKAEQLIQTLSAVDK
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
71
35.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.9
0.74
0.9
80.4
37
Minor 5ss
41.2
-1
2.7
52.5
44.7
Minor BPS
62.1
0.24
1.7
66.34
42.3

Associated Gene:

Gene:
CDH6
Ensembl Gene ID:
ENSAPLG00000005708
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005960
75671287 - 75770008
98722
ENSAPLT00000022926
75669204 - 75724036
54833