Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_75676841_75681160_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

75676841 - 75681160

Intron Length:

4320

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTCAA

5'SS Class:

major

3'SS Sequence:

TTTATCATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

GTTTTATCATTT

Flanking Amino Acid:

HNITVIAAEINNPKQSSRVP

Intron Amino Acid Position:

464

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

68.2

38.6

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

0.79

0.8

82.3

33.9

Minor 5ss

35.7

-1.6

2.9

46.8

42.6

Minor BPS

47.2

-0.1

69.87

41.2

Associated Gene:

Gene:

CDH6

Ensembl Gene ID:

ENSAPLG00000005708

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022926

75669204 - 75724036

54833

ENSAPLT00000005960

75671287 - 75770008

98722